基于转录组学鉴定骨肉瘤关键基因及相关通路
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1.南京医科大学鼓楼临床医学院;2.南京大学附属鼓楼医院骨科

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白求恩公益基金“恒学精进-医学研究”


Identification of key genes and related pathways in osteosarcoma based on transcriptomics
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1.Drum Tower Clinical College Affiliated to Nanjing Medical University;2.Department of Orthopaedics,Drum Tower Hospital Affiliated to Nanjing University Medical school

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    摘要:

    目的:通过转录组测序和生物信息学分析寻找骨肉瘤发生的关键基因和相关通路。方法:收集骨肉瘤组织和癌旁对照组织,通过转录组芯片建立表达谱并筛选差异性表达基因(DEGs)。利用在线数据库对DEGs进行GO和KEGG富集分析。结果:本研究共纳入5对骨肉瘤和癌旁对照组织,共筛选出1211个在肿瘤组织中表达显著上调和810个显著下调的基因。GO分析显示提示DEGs主要富集于组织发育、小分子代谢过程和细胞周期等生物过程,KEGG分析提示DEGs主要涉及黏着斑、细胞外基质受体相互作用、癌症信号通路和细胞周期相关通路。结论:COL1A1、SPP1、POSTN、TYMS、TNC、ATP1A2、PDK4、CLIC5、ACTA1和FABP4可能在骨肉瘤的发生发展中起重要调控作用。

    Abstract:

    Objective: Transcriptome sequencing and bioinformatics analysis were used to identify key genes and related pathways in osteosarcoma. Methods: osteosarcoma tissues and adjacent control tissues were collected, expression profiles were established by transcriptome microarray and differential expression genes (DEGs) were screened. The GO and KEGG enrichment analysis of DEGs was performed through online database. Results: A total of 5 pairs of osteosarcoma and para-tumor control tissues were included in this study. A total of 1211 genes with significantly up-regulated expression and 810 significantly down-regulated expression were screened in tumor tissues. GO analysis suggested that DEGs was mainly concentrated in biological processes such as tissue development, small molecule metabolism and cell cycle, while KEGG analysis suggested that DEGs was mainly involved in adhesion plaques, extracellular matrix receptor interactions, cancer signaling pathways and cell cycle related pathways. Conclusion: COL1A1, SPP1, POSTN, TYMS, TNC, ATP1A2, PDK4, CLIC5, ACTA1 and FABP4 may play an important role in the development of osteosarcoma.

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  • 收稿日期:2023-10-19
  • 最后修改日期:2023-12-26
  • 录用日期:2024-03-11
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