骨肉瘤中circRNA-miRNA-mRNA相关调控网络的构建与研究
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山东省博兴县人民医院

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R738

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Construction and study of circRNA-miRNA-mRNA-related regulatory network in osteosarcoma
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Boxing County People Hospital, Binzhou City, Shandong Province

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    摘要:

    目的 利用GEO数据库中骨肉瘤(Osteosarcoma,OS)基因表达谱数据,通过生物信息学方法构建circRNA-miRNA-mRNA调控网络,探讨OS的发病机制,为OS的后续研究提供依据。方法:基于GEO数据库筛选出在OS中差异表达的circRNAs,miRNAs和mRNAs。利用StarBase预测circRNA-miRNA的相互作用。通过TargetScan和StarBase预测miRNA靶向的mRNAs。利用Cytoscape中的ClueGO插件进行基因功能和通路富集分析。进一步筛选出circRNA-miRNA-mRNA网络中与OS患者预后相关的mRNAs。结果:通过R语言进行筛选,与正常骨组织相比,OS组织中共有6个circRNAs和504个mRNAs上调,124个miRNAs下调。circRNA-miRNA-mRNA调控网络中的基因通过基因功能和通路富集分析发现与多种致癌作用有关,表明其可能在OS的发生发展中发挥重要作用。进一步分析显示FSCN1、MMYO10、NUDT11、SDC4、UBE2V2基因高表达与OS患者预后差显著相关。结论:circRNA-miRNA-mRNA网络可能为OS发生发展的分子机制提供有价值的数据支持,FSCN1、MMYO10、NUDT11、SDC4、UBE2V2可能是OS新的潜在预后生物标志物。

    Abstract:

    Purpose To identify thedifferentially expressed circRNAs, mRNAs, and miRNAs between Osteosarcoma (OS) and normal tissues and the miRNAswhich significantly associated with prognosis of OS by analyzing geneexpression data in Gene Expression Omnibus (GEO) database.Methods Data on circRNAs,mRNAs, and miRNAs with differential expression in OS, compared to normal tissue, were obtained from the GEO database. circRNAs-miRNA interactions were predicted by the StarBase database. Different online toolsTargetScan andStarBase were cooperatively utilized to predict the mRNAs targeted by miRNAs. The plugins of BiNGOandClueGOin Cytoscape were used to conduct the functional and pathway enrichment analyses.Data on mRNAs expression and clinical in OS were obtained from GEO. Results A total of 6circRNAs (hsa_circ_0000006, hsa_circ_0046264, hsa_circ_0078767, hsa_circ_0094088, hsa_circ_0096041and hsa_circ_0049271) and 504 mRNAs were found to be upregulatedand 124 miRNAs were down-regulatedinOS tissues compared to normal tissues, based on the GEO database. The circRNAs-related ceRNA network was found to be associated with OS carcinogenesis by biofunctional analysis. FSCN1, MMYO10, NUDT11, SDC4, and UBE2V2high expressionswere associated with poor prognosis, and proved to be risk factors in patients with OS, based on the GEO database.Conclusion ThecircRNA-miRNA-mRNA network may provide valuable information on the mechanisms of OS initiation and progression. FSCN1, MMYO10, NUDT11, SDC4, and UBE2V2 proved to be a new potential prognostic biomarker for OS.

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  • 收稿日期:2021-01-27
  • 最后修改日期:2021-05-10
  • 录用日期:2021-05-31
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